Scaffold Ga0126374_10047178

Overview

Basic Information

• Taxon OID: 3300009792
• Scaffold ID: Ga0126374_10047178
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2158
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000792	Metagenome / Metatranscriptome	890	Y
F002001	Metagenome / Metatranscriptome	606	Y
F002887	Metagenome / Metatranscriptome	523	Y
F033785	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126374_100471782	F033785	GAGG	MDKDYLVLKRASTSRSSGEWNDDDYDVLADGAVNGRP*
Ga0126374_100471783	F002001	N/A	MLLRPEYLSQKRDQPLPTKDGGVLRTVLDARTYMLALSKDRERRAQWQRAAELLLDGADVGAFSKALELALFYDAKLDVSKVPAR*
Ga0126374_100471784	F002887	AGGAGG	MAPKPKSKLARFVFAVATALTILAVMTWEMAAPSSLIYPIYQPQLLLLY*
Ga0126374_100471785	F000792	GAGG	MREHVLLFCLLGLVLIATIILVTAPGAVIWALALIE*