Scaffold Ga0105235_106782

Overview

Basic Information

• Taxon OID: 3300009791
• Scaffold ID: Ga0105235_106782
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3819_2500
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1486
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 9.7046
  • Long. (^o): -55.3027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006198	Metagenome / Metatranscriptome	379	Y
F011620	Metagenome / Metatranscriptome	289	Y
F019388	Metagenome / Metatranscriptome	230	N
F072734	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105235_1067821	F072734	GGAG	MSMMKFDDSKIKEIRKRKEQGLPSPPSGDVVEQSKNAKGGSELIYQRVKERVPEDLWNYFQIILSRVREYEDK
Ga0105235_1067822	F011620	GGA	MFDKILHAVLKFFGKEKPEPPTEEKNESLEALERVEALDKIGDPS*
Ga0105235_1067823	F019388	AGGA	MQTPNEQNPYLVETKNGQILKFNKIDADNAAATKQLDGDDVEVFHDGKLQYKLHGIEQGKLF*
Ga0105235_1067825	F006198	GGA	MEVELAVECNNCNATYTMIYDSDDIQTKQEEHAFHCAFCGILMEPYYDEFFEED*