Scaffold Ga0115012_10116552

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10116552
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1890
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F059941	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_101165525	F059941	GAGG	VKLGTLVQFAAYGAVMDTGYVSSHDKEDPELMWVECVKMGPQRVRKDHTLLEVLSEAR*
Ga0115012_101165526	F015346	GAG	MKHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGSSVSRQYPVRYLVEL*
Ga0115012_101165527	F021674	GGAG	MERETYNTRLKSNPEDIPVGSLLRVKKHCRKNVTIRHNGEYGILALSDSGKYITHDVLFPNGTRCIYMPLNWEVVSYA*
Ga0115012_101165528	F006383	GGAGG	MRDKMWEVQQPGTLLRARSSHQYGQLALVLEEAYDGAMPSNGYPPRQYVKMQWVATGERFEEMLVNAHNCFDIVSS