Scaffold Ga0115012_10104109

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10104109
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_101041092	F018286	GGAG	MLTTFILVGMIDSFDSHFATVELNTTPESNGGPATAVMPVSAFPCEIYEGKVFYIVKLYENEDATIICQKDVNSDPERERPD*
Ga0115012_101041094	F059942	GGAGG	VNVGDLISFKPIDFGLEDWSNPCIVMFEYESPNKGLWSVWCDGVFCVIDDTNYEILHLTGSLHKES*
Ga0115012_101041095	F067640	AGGAGG	MIEVGSLLRMWGNHSTWIALDEIADSVLVVSQKRNHKMWASKAAFEVIG*
Ga0115012_101041096	F057352	GAGG	MKLWVLRGTYENELFSSIHLTEKGCALAAIADVLDFLSVADEESALQVMNDCYAYTETDGKQTEAFEWDHDKMKEMSSKDLWKIFTDWTEISWDRMSDRSYYIDATPQMVQA*