Scaffold Ga0115012_10087077

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10087077
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2164
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F063608	Metagenome	129	Y
F071754	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_100870771	F071754	AGGA	MYITLPDSPVRKIFKCNNCSNYHIKFFDPKHDRTYTQSEWEQIITDGKEALYKALQVVREDPKFFA*
Ga0115012_100870773	F063608	N/A	MEKISMKRKDNLKTRILKEYVKVSKTAPREAKTWKEVAARVRWERLRNILWRRYDYMQSL
Ga0115012_100870775	F001689	AGGAG	MILKKDYEAVFKEGFRLGVRLTRAKSCLENARNAKLINDESMEKLQMEFYKDWSELARNAGRKFTPIAAHEPDQPAFDFGDIEMQLHLSTSPFKETG*