Scaffold Ga0115012_10069701

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10069701
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2399
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F057352	Metagenome	136	Y
F067640	Metagenome	125	Y
F070089	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_100697011	F010950	N/A	MNIWVVRQTCLYDHETYVSSHLTEKGALITAIKTVRSDLVDGFDEDEIDDYRPDLPHNPEEDLMQYSSKQLRGIVQDWWEYSWDINEQAQYQIYETQVEA*
Ga0115012_1006970110	F070089	N/A	MKVGDLVKYESVLNDSMDRYTVEYGLVMQLSKTGHDTLSVQVFFGDTARPCWVDSGKLVVVSEAG*
Ga0115012_100697012	F057352	N/A	LRAVGVILYVQGEEMKLWVLNGTYENELFSSIHLTEKGCALAAIADVLDFLSVSDEESALQVINDCYAFTATDGPQTEAFEWDHDKMKEMSSKDLWKIFADWTETCWERMSDRSYYIDATPQMVQA*
Ga0115012_100697014	F067640	AGGAGG	MIEVGSLLRMWGNHSKWIALDVIADQVLVVSQKRNHKMWQTKCAFEVIG*