Scaffold Ga0115012_10040400

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10040400
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3069
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED36 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F005038	Metagenome / Metatranscriptome	414	Y
F050002	Metagenome	146	Y
F053631	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_100404003	F004629	AGGA	MTIPAKLTVNELDNMFQTATYVERYLPNPHIKNQKTDMFNLIDRLYGIGKDKDSYKGEDKPKIKIRLNGEQLQIYEFCLLLLIKANEKDRDIIQLRNFPNRRSFRQLQRFFLPNSHEKVRNDYYLALYQLIKLYHLKGKKYFLK*
Ga0115012_100404007	F050002	AGGAGG	MSDYFVKNIHQDLNNFDMYLQEHFERVSYDDDADVNSCITDMKYVSKRLQKLDRIEKILETKEG*
Ga0115012_100404008	F005038	AGGAGG	MKAKDLNIYNLFSATYKKRKMFSFIGFSELSLMPKIDKPIRQISNVYQFPILRTYNQKRRIK*
Ga0115012_100404009	F053631	GGAGG	MIKSIYFALCFGLALFGLLILTHISIPIGLSMFFLFIVKFLLMLPKYEEE*