Scaffold Ga0115012_10011760

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10011760
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5330
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F026439	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_100117603	F026439	N/A	MYRKKGDYSMASQLDTVTLYSDAVDQFTDSILPMIQESEQRLGHVDIPARSEAWSNFVDGLHCDEQISDWQVANWEHPPCCD*
Ga0115012_100117604	F025414	GAG	VRVGSLVRETMDGNVGIILAWENDGWLVNFPKHGMVFHMLPRLLEIVDNSLDISLTT*
Ga0115012_100117608	F008590	GGGGG	MSVGDLVTYWHQRPRWRKGESVSLGLIIETGKYTGNRDVKVLWTSEPEPLTECSQHLSLVDDSLTT*
Ga0115012_100117609	F019158	N/A	MKMTLVIDTDDREGINDALKMVRIMHAKYSGNATYHKESFGKIEFIKLLRKFMKESVEHMKNDEDGQVKDINDLANLRNAKRFADRIFTGER*