Scaffold Ga0115012_10009360

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115012_10009360

Scaffold Ga0115012_10009360

Overview

Basic Information
Taxon OID	3300009790 Open in IMG/M
Scaffold ID	Ga0115012_10009360 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5917
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	2.405	Long. (^o)	-13.602	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068129	Metagenome	125	Y
F099849	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_100093601	F099849	N/A	RNKNMTFVFEKEMKLAPLKVEYVMSSITNEIKIVDMWYAGKSSKSSYMSDENRLNLMDELERDYLDKSKNN*
Ga0115012_1000936011	F068129	AGGA	MDLEEVLHNLEEARELEDWDMVDECIESIRVLIDDFDEYQNEEDWG*

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