Scaffold Ga0115012_10005839

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10005839
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7326
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004368	Metagenome / Metatranscriptome	441	Y
F004819	Metagenome / Metatranscriptome	422	Y
F023710	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_1000583912	F004819	GGAGG	MQFYPKAKDPRLDERSARFHGRVLKNDLATLPYVPNTPNRDINIARATNYVTWDYGKDMWAEVDHLMMNFYINAKTTDTREYLEDKINRDVVMLLKGPRYYQQAKVYCTIDMFYPEDESIYDIVKLPKKDRKKAGWGISGKEGEVTYHVTLHVQECNNTDLAVYDEEGRGDFFDLSGKNLETEMETA*
Ga0115012_1000583916	F004368	AGAAGG	MGTRLADIVFDRHEDFLYEDERAMKLTPYVMAERCLQVEAAKIYNDKAEGDYSTLTYILEGGFKGFHNMDSSELIEEYKQIEETWYELESCNGLYWEPYEEDPIHKLKEEDTTLTQEMKDEIKAKIEDIKENR*
Ga0115012_100058397	F023710	N/A	MLKTIEKRLESFVRAELAGVHRIEMTHGTMYLVLDKPGDCDFIHREIRKFYKENINPEGGVNMYAVGEEFAFDFVPEDREAPVFADEDEAEAQAEIQMDLEADAKEGR*