Scaffold Ga0115012

Basic Information
Taxon OID	3300009790 Open in IMG/M
Scaffold ID	Ga0115012_10004223 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009790 Open in IMG/M

Scaffold ID

Ga0115012_10004223 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8539
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (12.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8539

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (12.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	2.405	Long. (^o)	-13.602	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

Tropical Atlantic Ocean

Coordinates

Lat. (^o)

2.405

Long. (^o)

-13.602

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028316	Metagenome / Metatranscriptome	192	Y
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F072246	Metagenome / Metatranscriptome	121	Y
F105495	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_1000422310	F105495	N/A	MHKPNQLRSITAPSGGTARPIVKEVRVGDEIRTEAHYTDPRTGQFITKIPISVRKVDDK*
Ga0115012_1000422314	F028316	N/A	MKKNIPKNFDNLLKSSISAAESIDNNQTDLSVMNDYLSEYLKSFVLLGYDTKGESVVIIAGKNPQDYDAIETLLRRVSGIDFFDTTQEQKNNPDNE*
Ga0115012_1000422315	F035326	GAG	MKNKVTTCGYFIKRLRDNGYIVNRIFNDYNSGDSRRWTIMINPKQVALYITCYMNKDWYGDLVFELNNGNQFKNLQLKTDSMEVIITKLIEKNILPENEKKYT*
Ga0115012_100042234	F072246	N/A	MTNNENQTDYSKLARWLCLYEAVNIISDKADKIGAGKDCLKPIPISKYITERYPSLLKDLEHEIQISNNRHTRRR*
Ga0115012_100042236	F033600	N/A	MKGILFEDLYMYTNKYWKDVKSRHVRPTTKTLADIAKASPETYNKVKADLVPFPGDHAVEQLGTAFKNISDAQLLLNRLFENPTVRSDEKTQKSVNLKLQKIQDLIKSVSDDLDHDGANNS*
Ga0115012_100042237	F033590	N/A	MGKFENKFLSLLKEDDVPAIDANPGDDQAALANTLDDPSTAGDLEDVQDNQPNTERELELLQDWTSNIDEILQYLNGGTDSVLGVLRTDNKIGTIFDGISDATKSEVLDVCERLASLNQIFKNLYLEKHK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115012_10004223

Overview

Ecosystem & Geography

Associated Families

Sequences