Scaffold Ga0115012_10002257

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10002257
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11209
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F013153	Metagenome	274	Y
F053286	Metagenome	141	Y
F105145	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_1000225710	F013153	GAGG	LENKLKKTFWVILILTLLTGSCDDRIEDPDKSNIIVTMLRVSRIEILDNLWITPAPIWGHLESEDGVPVERLVVHWWSNMYWNENDSSGHYRLLPNRRNKAIWYDNFGNRDTVDVNVDTLRWTTDKYSEVDSSGYFYNTLTPTKMMQDKFMKLYWSIENTLIDSQEIFLMD*
Ga0115012_1000225715	F003091	GAG	MKPITKPGEGKPRQKYLTKERYLEERYQISTGLQGPKRLENESFEDFKIRRKAENGLLKEYLRGVWVKKED*
Ga0115012_1000225721	F105145	N/A	MTNKQLVNYIIDKFDGVIIDDYDREVHKVDGKPYNITFDRSRLEWSCSCPAFTYRRRFNTSKCKHIVQVQNERFKKLTERNK*
Ga0115012_1000225723	F053286	GGAG	MNYQETLYGKQYLLGKDVYVDGKHKILNVPLIDMMDELGFIPEDEYSQIFTLSVVWYEDDGDVMVHQIYDHDSGIIYWEDKTNDEWTDNDEQLLDALLMYGNLQETIGENYV*