Scaffold Ga0115012_10000572

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10000572
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20966
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F052547	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_1000057210	F052547	GAGG	MGIVTNNKAHAQASDDFDLSFSEGHKVKVQFNCEVLSGCEFKCKGCFVNKLGSNVGSFDKLNNAIDLFKNNGYHVSTINIGPTDLFGNNNIISLLENKVFRECLSKVTTIQFVTTLENIDLRVIDKLNSIPKRDGFMYDCNIQLQPPVNWADIKDKMSALDLFWDDLNYYFVYNMGNDDEYNEQVLDMSRVTDKVFDSILTLNPSFFRAQKSKVHKHLIEKWKKYDFSDDLYPKTIVDQAQGGSLELNYTFCNDRFFWTPFVYDIVLIGTDEFEVKDPTDLNSWEEPKTNMFTKQLMYDTESCSGCVNQMTCIDKGVLAYMQHHSLTACVFPGVVADN*
Ga0115012_100005724	F040106	GAGG	MTMQKSYCKQMRYSGPESLAPSDAYKFDVLIQMEVLAGCDHGCLGCFVDKNIDPDMNQAIINRAKELADGVKRTGLNLREFVIGPTDFFTAENTKAVLNNSAVQDIMREHTGARIAAPAKFDKVSMEKLKEIFAVLDDEDKYRRDMIIEFIMPIGRVAEMLDDDDYYNEVMKKVEFFKNDTPKQMDWSWTLQASNVVGKKIDKETYNKIIDKSVNEYETIVEMNPAFSRARNQLIKRNNLFAWNDFLGKVIDEDNASETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLENKNLDVTGLSFEEILQRKNELVLKGINKSSQVKDCSDCQFAIACANRLVFEAQDSLNVNGCVMNKEVLDLYNPYDFTWNDDAERAMA*
Ga0115012_100005727	F042905	AGAAGG	MIVTLNNTNAGYYTYDPELSPINQDFLRTEINLDILHGCDQMCPGCFIPRKNFTKADDLETLYNLLVGGQYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWVIKEKLDKIWSLYRHIKRIPDIDFKIVLDVDKYLDGELDEWYKKLKLFEHGSVQFRVNYYKGVFDRISYNDLCEKTFEDFNAPVVITPSFLTDRNARGKVSQHLANFREDLLNQNIDEKWQNYYTFFDAKFNGLGCQNYSYYNGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLNSCVAIKENMHASH*