Scaffold Ga0115012_10000498

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10000498
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22232
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F020445	Metagenome / Metatranscriptome	224	N
F032821	Metagenome	179	N
F046000	Metagenome / Metatranscriptome	152	N
F081230	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_1000049811	F016292	N/A	MTNQPKILGDCYKKFGLAHTSKSQNTIPDDIRLRNYILITKKQKANLPTNCSFTGGTISHEVIQSVKCSNKSFGDAFKLVKDKITNYEPVDEKDKIKFNYIIENLEPLVQNHLDNIKEIPNQEWKAELEYTHWDSEKIKTYFLAYVDLVGETHFGDIKNVFGTLTKTKKGYSYSKRKCPQVPFHSDCLQIALYQKLLPKHKPFLTYASDSDRVIFTPENCVELRPENLQYYYDELILYQRCWEKKLELADGDIKTLALLVKPDFSEIRKNGFWWKGIDPEIIKSFRDLYEL*
Ga0115012_1000049816	F032821	N/A	MIEVKLDLYDIMAASQTGLLRVFESLRLKQDWGHNYKGSVNDQIAKSISGACAELAVCRYLDTSFNFHVNHGANPDIIWHDVHLQVRSQLPKKHNSLIIRPKGSKAGEIYVLVIDKSPTYEIHGFVNSSYVLGTEKYLTDFGITDRPKVHSLSLDKLTPIKFLKDGAWN*
Ga0115012_1000049823	F081230	N/A	MITVRLTTDQLDRFLSIAAFVDNKLPGLKKPRCTTNFELLDVSPDKDTYKDSAPSTARPRIIPTSRQLSIYDFVTMLMLDVKADKRELIYLRHFPYRSYRQLKRFYLDWSHEKIRYMYFRALVEACEVANKNLKKYL*
Ga0115012_1000049825	F046000	N/A	MANKTKKNDKVIKEMLEELAQGKSLRAVLSPQNKDPDRPCWETFRSWMKKDNNLRLAYEEAKMDSMEFVLSAATDLLNESIANSKTKEKTDLGQTHLIKSFVDLSKWKSERIQPKYYAKKDATTLNFDKNTPLVVKWDK*
Ga0115012_100004988	F020445	AGGAG	MADNNYDNSGAMWKRQSRDTDVAGKKYPQYEGNITVGGTKKKVAAWLNVEKTKDTQPDISLKISDMVSKESTPF*