Scaffold Ga0126307_10211669

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10211669
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1556
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001245	Metagenome / Metatranscriptome	737	Y
F064450	Metagenome	128	Y
F066521	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_102116691	F064450	AGCAG	MDWPELQVANIEKAMSSVTLFYWGTKEEVGKRWHQKQLELTDEEAESI
Ga0126307_102116692	F001245	AGGAG	MSEKALGMLKHMRRQIFRHPAPYVEVRGAAFSIGVNPGGSECDDLVHELLQAGYIRTYPSPSLTAHGLYRITDRGIAAAQEG*
Ga0126307_102116694	F066521	N/A	RQLAPTRASGMLEAISLDGVVLSVEDRVVFIPRESVLQMELYETRGRGSRLRLERDAPEPADPSDPLEDPGTIGTE*