Basic Information | |
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Taxon OID | 3300009789 Open in IMG/M |
Scaffold ID | Ga0126307_10197839 Open in IMG/M |
Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1612 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
Coordinates | Lat. (o) | 38.8692 | Long. (o) | -122.4283 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001245 | Metagenome / Metatranscriptome | 737 | Y |
F002864 | Metagenome / Metatranscriptome | 525 | Y |
F036979 | Metagenome / Metatranscriptome | 169 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126307_101978391 | F036979 | AGGAG | MRNDQTAQDAKRLLAAISTNHSEARMASPYGLDRPFSPSWA |
Ga0126307_101978392 | F001245 | AGGAGG | MSDKAWGMLKHMRKQILGHPAPYVEVRGAALSIGVNPGGSECDGLVDELVQAGYIQSYPSPSLTAHGLYRMTDRGIVAAQEG* |
Ga0126307_101978393 | F002864 | AGGGGG | MEALVAEGVRQVSEQEPVRIPREVLEELESVRRYTRAEVLDIPTIRHVAMERGKTALVVWIDKHEQEYGQGLLNGFQAED* |
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