Scaffold Ga0126307_10116824

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10116824
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2121
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023048	Metagenome	211	Y
F041424	Metagenome	160	Y
F062509	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_101168241	F062509	N/A	QSLVRSQGMTNGENCRDLLRCLSTALAMTEAAYLEARRRRDL*
Ga0126307_101168242	F041424	AGAAGG	VDKRGVRDELFDMAKEVAEFEVFPMPAELDGDLDSAFLISTELLIGVPKMFIVRVEEFHYSPEEADNETDKILEEQQRYIKGVLSEHKIELSEAAWETVFAYAVLDVDPSSTSGRLSEDEVRSVEEAFEALGLDP*
Ga0126307_101168244	F023048	GGAG	LKADAAQWLTDPEYAALRHRLEEAVEAALMEARRRVRLDEERPQ*