Scaffold Ga0126307_10073745

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10073745
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2689
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002921	Metagenome	520	Y
F003935	Metagenome / Metatranscriptome	461	Y
F006916	Metagenome / Metatranscriptome	362	Y
F061596	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100737452	F006916	GGA	MKPRVRAQLHSSSARSSKIIKDHTQIETVVEVEGVGRLVLDVDSKGGYSLRAYPEDSEDPSRDLLAVGVMHADGIVAIHPQGFSAVDG*
Ga0126307_100737453	F003935	AGGAG	MDDEMLPKIDYYIDQSDPDVVIPRRQDGSFVAAFSARGATREGIVEAAKEDYRKVIEANAESLGLREEGDRLKSA*
Ga0126307_100737454	F061596	GGAG	VEHYEWMNDQVRKEIEVLQRSYGFDEDEALAYWHLRHAGTLLLAMRRADAPERAEEGEESVRLARMIHGRAQIESNIVQHLSALRRELGDRVLRRNYPEGWGTEHKGLDE*
Ga0126307_100737456	F002921	AGGAG	MDTTESSAPHAHPSTEDYDDTVEAHYACLERPCACLEGWVFVGYIDENGEEREASYACWRCADSR*