Scaffold Ga0126307_10061428

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10061428
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2946
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003133	Metagenome / Metatranscriptome	505	Y
F007281	Metagenome / Metatranscriptome	354	Y
F020164	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100614281	F003133	N/A	GPEERKHDMEQEGTVQRDRQEGMLKLLLGRICCLVGLLLGAGGFVVAILGQSVNLSAGAVGITLGVLGYFLGARRLGAASVVLGTAAIFFMAAASTGLIPGIEPLGHGYN*
Ga0126307_100614284	F020164	GGAGG	LAGYLPKEWNGKRVAVRFARGRGFDARLVGDNAGGLTVEPINEDAEDAEEESARSAFVPWAAVRYVQLLEEPSEPQRARPKRTATKKPEDPAP*
Ga0126307_100614285	F007281	GGAGG	MAGEQYYALCVEEDDGSTEIAFFELGREALPGALGISLYTSPDGELQRRHLQGNDHVVIAAKSPRDLLEAMSTGVPSSVFVDGEKIAGSVFKAMLKE