NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10020682

Scaffold Ga0126307_10020682


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10020682 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4968
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001183Metagenome / Metatranscriptome755Y
F001245Metagenome / Metatranscriptome737Y
F004217Metagenome / Metatranscriptome448Y
F009947Metagenome310Y
F016872Metagenome / Metatranscriptome244Y
F030872Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_1002068210F004217GGAGMEREEAELRALNQEEASLRAANKRITTMAEEVRKAELVRDRLEGLGRLMGSYPEGHEMRARLEALHVDRALEGVNEDIQRLTNALLYPRGT*
Ga0126307_1002068211F001183AGGAGLSEEEQRQRVRELVRKQTGMDWPELTVVDVQKSMSSVTLFYWGTKEEVGKRWHQKQLELTDE
Ga0126307_100206822F009947GGAGGMASRDKAVGVGPWDTEWAAERAAEALRYLGRNYPECLENLRAMDEHETAAHKAALLGDREGCLEALRGYMRAGREEALEIRRGAA*
Ga0126307_100206825F030872GGAGGLPVRCAGTKRDGSPCTATVEGPKRFCWWHDPANADKRRRAASKAGKSKPSRELAGIKQRLSDLADDVLEGRQDKGVAAVAGQVLNVYLRAVSVELKTREQAELIERLEALETAQAQNRGGGRWRA*
Ga0126307_100206828F001245AGGAMSEKALAMLRHMRMQIVGQPAPYVAVRGAAIGVGVDPGGSECEGLVDELLRGGHIRRYPTTSLTAHGLYRLTDRGIAAADEG*
Ga0126307_100206829F016872GGAGGVEKKCSEGRRNMHDAEQAAQDATRLLVAFSTNHPEARIVSPHGLDRPFTPTWADADQAGLDRVRRADAMRWLVEENMLEREEEEAEKTRGARGAGFHSEYGSVFRITDTGRELLEDA*
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