Scaffold Ga0126307_10018559

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10018559
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5216
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036415	Metagenome / Metatranscriptome	170	Y
F057658	Metagenome	136	N
F072725	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100185592	F072725	GGAGG	MSVPPQQMLEELRKAEHSRDLLGELERRLSAGNTDLENLLRQLEQLGQSLPESDPIRLLIEDAVGAARTRDSIKAGSDVSRSRSAIEGEISSLQGAIQGVQGRSDL*
Ga0126307_100185594	F057658	AGG	MDDNHRIAEQHARGEIEPARPQSSDEAVQGRMARLDVSQELARYLLDLETRIWELEMDLKELKQRLNH*
Ga0126307_100185595	F036415	AGGAGG	VSEQRLLQKYRPGDEIDLVVHIEHAPMHLREVSARFFSRGEEGGIISHMDLSGTPSTSEDQPSRQQGALQSEVRLSGKVAPDGAPGLYRLNRVTVKTYGGREHHYSAEELDEMGFEIVEEPDNRPLVLQIEMGFRTEY*