Scaffold Ga0126307_10010378

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10010378
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6758
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057182	Metagenome / Metatranscriptome	136	Y
F070062	Metagenome / Metatranscriptome	123	N
F081017	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100103782	F057182	N/A	LLENVQAQTNSTNQTTPQQQQSQNMNLTAQALMKVNIFEIKDTLTKAKLAIIDGHLLEALTDVRNVETQLLLIKPSPTKFLSDMHKAVYAIARADIGKSLDTLTKIQLDILKVENQIFKAAVANPQVMQQVKAAMTNPQIMQQFDTVEPNTDEEEDSTDIEDT*
Ga0126307_100103786	F081017	N/A	LTITNSYKFESNITALNNGRIVNKPKGYRFQIGDYLMYNKEKDFYYNLSYAQIKNLYWNSELIVGYIANDQINNNNGNKDKTSMIDFLEAINE*
Ga0126307_100103788	F070062	N/A	MDFNVSVGDENQDIKILAPWFLNCLNRLSGSNPAKFILKQQVFAQTPMNGFKADPEKYQKYVDLKGNPDSTSVFEPVILFLERNRFLRISSVNSAKIAITRIGVDKCNEPTDIEWSYNHTFYPIEDDDDIAKNPGYRNYK*