Scaffold Ga0126307_10009227

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10009227
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7109
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005142	Metagenome	410	Y
F009947	Metagenome	310	Y
F038573	Metagenome	165	N
F040490	Metagenome	161	Y
F057149	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000922712	F038573	AGGAG	MDDKEGQIDEMGEAREAQYALECVLVRLTEAELQRVIDDLPPRARRHIRATTAHKIRHLGE*
Ga0126307_100092272	F057149	GGCGG	VSVSGAHEQFCHLHDPDRSEERQRAARRAGKAKPSSREVRDLKEEIKNVIADVRAGDLDRNDAAVMIQGYRALKDCIALERQVRETDELAAEIEELKREYGAA*
Ga0126307_100092273	F005142	GGAG	LAEILEAMTALAVDGTPALPKRVGPKGLLPSTWVDRTLRVAYVDCRGAGQETSGTLLALYPAGPVLNIGGAKTLLSWDRLVLCELAED*
Ga0126307_100092274	F009947	GAGG	MASRDRAVGVEPWDTEWAAERAADALRFLGRNYPEFLENLRALDEAEEAAHEAAMDGDRGAYLDALRSHCRAGRDEALRIRRGAA*
Ga0126307_100092279	F040490	AGGAGG	MDTRESSAPHAHPSTEDQDHPHACLNGYVYLGYTALDEETGEEVERVEALPCRRCASEASR*