Scaffold Ga0126307_10005217

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10005217
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9084
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000756	Metagenome / Metatranscriptome	905	Y
F007998	Metagenome / Metatranscriptome	341	Y
F041052	Metagenome / Metatranscriptome	160	Y
F066646	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000521713	F066646	AGGAGG	VQRLTEDQRARVEKLATDEGTTCEGCGCARLRCGEEALRTHDHGLMVYLWCANDVHPRGAYQYFTIPPGENIGT*
Ga0126307_1000521714	F000756	AGG	MDRERPGTSDSKEMIPEAWIGQEVMLETTETLSSDLRAAAPVYLEDVNDRGIVMLVTRHKDQSQFSRYFYPWSVVGWIRLAEEDERGREDRT*
Ga0126307_1000521715	F041052	N/A	MYREVLALSILLRRPDFEVLLASPGSLEGRADRFEPHVLVQDADENRLPDGVLCRIRLLDAGSMDATIELYETISEVQDVSLEDLFEVLEEVEELSKGDGARRAVDRSSWDYKVRAIGKDGRA*
Ga0126307_100052178	F007998	GGA	MFASLTSKLVTAVCAVVGAIALPGTFYLTVTGGSSYLQFAIALIFFAMFIVGSYWWMVFGPGRGL*