Scaffold Ga0126307_10003152

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10003152
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11218
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000972	Metagenome	817	Y
F001016	Metagenome	805	Y
F059713	Metagenome	133	Y
F067462	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000315215	F001016	GAGG	MGPQDPKDVARDTARDLSALVGELAALKADATHWLTDPEYAALRHRLEAAHAAAEAALVEARRRVRLNEG*
Ga0126307_1000315219	F000972	N/A	MADEDTVLEEAMDNLKQAGQRIRATQSLMRSEGMSDDENYRDLLTRLSTVLAMTEAAYLEARRRRSLIPLAPPSA*
Ga0126307_100031523	F067462	AGGAG	MFRDLNIIANEPDLLPLVREVYSRRPEACFLEPWELQSLLYLLNYSDGLIPEADIAAAVEVARTDLNPDVGAA*
Ga0126307_100031526	F059713	GGAG	VDIARGEMVERELNTMIERRSRKGEVDPAEREASWQESVRRYNARRRKENRLAWCGYFSHLASALRTRAEEYDHRAQALLEDRGEGRT*