NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126307_10002133

Scaffold Ga0126307_10002133


Overview

Basic Information
Taxon OID3300009789 Open in IMG/M
Scaffold IDGa0126307_10002133 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13302
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004425Metagenome438Y
F005142Metagenome410Y
F007136Metagenome357Y
F016368Metagenome / Metatranscriptome247Y
F030872Metagenome184Y
F036415Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0126307_1000213310F004425AGGVNSAQLLLAIRELYSSRPEYFHHEPWELQHVVFSLGYANDLADEAEIAAAAEVARADWPQWRPAA*
Ga0126307_1000213312F007136N/AMMVGSITARTLDYFGLLVAASVFALISAGVTAICVKYEERVLAWLWTAAYFGCGLAAAYFLWRLL*
Ga0126307_1000213314F005142GGAMTAPTVDGQPSLPKRRGPKGLLPSTWLERTLKIAYTDCYGSGQERSGTLLDFYPAEPILNVAGAKTLISWDRLVLCELVED*
Ga0126307_1000213322F016368AGGAGGMSGLVVLKAHKVNKVLPPGYQVDHDPDVAVLRRPDGSVVGYFPIWSMNPQRLLQEAKRDLASERLANL*
Ga0126307_1000213324F036415GAGLRKYRPGDEVEMVVHVEHAPMRLREVSARFFSQGQDEGGSISHMDLSGTPSINEDQPSQQGQATLQSEVRLSAKVAPDGAPGVYRLNRLTVKTYGGREHHYSADELDEMGFEIVEEPHNRPVVQIEMGFRTDY*
Ga0126307_100021335F030872GGAGGMNRCLGTKRDNSPCTVSVELPQTFCWWHDPANADARKQAAARGGKRAGRGRPQAELADIKRRILDLAGDVLEGAVDRGNAAVAGQLLNTYLRAVSVELKVREVEELAREVEDLREMIDMTNDRSA*
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