Scaffold Ga0126307_10001740

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10001740
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14470
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003229	Metagenome / Metatranscriptome	499	Y
F006197	Metagenome	379	Y
F049417	Metagenome / Metatranscriptome	146	Y
F051754	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000174016	F051754	GAG	LSERHIDAEGERRLDEAGFLPVESRVGKRRWKDPDTGMAMPGGSALDEVEGREEQELEGAGWERVEVGGKTYFSKPDSGRLYPRGAAYDTHRREGTEE*
Ga0126307_1000174017	F049417	GAGG	VREEEIIQVVPAQFGWFAYGRDEQGAEILAPVALWALVESSAGVRRVVGLTALKLGQVSRTEELPGFVEYRHISQE*
Ga0126307_100017407	F003229	AGTAGG	MRRSQPKLQRLHDEPKTTIAILGADTVVGRALCALLESNGYRTTPIASYPIGVVDDLLEGAHLLLLAPRLDRGVGEAFLAGMGKSTPQRASMPVIALSTTAEEEKLPEDRVISLPWPCETKVLVERIEAALLDAPAESAPPTTQAETGESSPAAVIRPF*
Ga0126307_100017408	F006197	N/A	MEPPEEPSLPPGYSLDHSDPEVLVLRFSHGTVVARFSVRGAEAKAIEREAWEHYRDHSESASGAL*