Scaffold Ga0126307_10000083

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10000083
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52596
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030751	Metagenome / Metatranscriptome	184	Y
F031719	Metagenome / Metatranscriptome	182	Y
F046396	Metagenome / Metatranscriptome	151	Y
F097419	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000008322	F097419	AGG	VDRERARATIRAGMVAASLALVVFALAFYVAVLYLR*
Ga0126307_1000008323	F046396	N/A	MSQPTEPTESIYLPKPTMFPALFALGFAALIVGLFAWWPYSVIGAFIALVSLIGWLRANRAEIERMPRHQRTDTAPIPLSVSPPADQ*
Ga0126307_1000008342	F030751	AGG	MEAGSPFQRYVDSGLESFGIEADETERAVMAGVWSIWEPGMNLLRDADLDGVDHETHPDLSSPPAP*
Ga0126307_1000008351	F031719	N/A	MRAGKLIAVFAIATLAIGALSAVALAGNKKKTKVLFFTGSPKVNKSGKVTAKGSINSTSVCKPGRGTRLQVLDPTGAVIAVLDGSTSDLSGNWKLQGQLPTGLAAGSSVRVKATKTTAGKLVCKAGVSIAVPIPATT*