Scaffold Ga0116226_10298015

Overview

Basic Information

• Taxon OID: 3300009787
• Scaffold ID: Ga0116226_10298015
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1661
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022136	Metagenome / Metatranscriptome	215	Y
F025203	Metagenome / Metatranscriptome	202	Y
F072983	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116226_102980151	F025203	AGGA	LNCENTNKKKVTRDKCILLGIKDDNVPPKFIVPIENATLKDHNSYKSGLKNIKF*
Ga0116226_102980152	F072983	N/A	VQNAIPALDHKTHTGCGESKHYSHMGMKKSNYKEILNIKYSCKGIKPLFMVVYLMKLDALFISNN*
Ga0116226_102980153	F022136	N/A	MEFSNIVGLRYNLGIAYVNIFNDGRFNSSMSVLSKFVLVYGFIMQVLYAMYIGIINILYHDMGIVMGIPNHNIDFKGTMYVLHFGFLFNDECLYNYKFS*