Scaffold Ga0114999_10264613

Overview

Basic Information

• Taxon OID: 3300009786
• Scaffold ID: Ga0114999_10264613
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1397
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019910	Metagenome	227	Y
F059361	Metagenome	134	Y
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114999_102646133	F083382	AGG	MIMDKDKENNVPVSVEDAGAIAKKEYESFIKKQEEDLDNQTYSEGEKYD*
Ga0114999_102646135	F019910	AGGAG	MTMSRDINTIPTTDRHIVSYTIQVEWSDNPKSVVLEHDMPSHVANAIDEWFGEIEEEENV
Ga0114999_102646137	F059361	AGGAG	MISDAITTVGFALQSYVNTCIHEDTEENRAERVELEVAWSIIKSHLNMSDDDMPKDKRRPQRGH*