NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114999_10100324

Scaffold Ga0114999_10100324


Overview

Basic Information
Taxon OID3300009786 Open in IMG/M
Scaffold IDGa0114999_10100324 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2524
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023712Metagenome209Y
F047110Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0114999_101003241F023712N/AMRDKITYELSWKNEDTNRVSSKKFTGKDGEDHSAMDEALELAQEADGNLWPWVLERDGHEIAYGWGGEGLTRGRLFPTCG*
Ga0114999_101003246F047110N/AMKNKKTNKMNPVVSINWKIKDLIREKLSFQKWHLTVFGVDASRKVLSKIKAEAKELVEMKQAMLLAATD*

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