Scaffold Ga0114999_10086743

Overview

Basic Information

• Taxon OID: 3300009786
• Scaffold ID: Ga0114999_10086743
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2754
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 213

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051547	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114999_100867434	F001235	AGGA	LPEKLETNENANDMTKKLWERHQADEFTAVNEYKEGVCLGCMKVDRAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQVNGRFCNTCHTRIAKVTKEYNKKGGFMKTDPFWISMRKKHGKDWKKIMGGYTKGNRR*
Ga0114999_100867439	F051547	N/A	MIDPLLIATLAVICGAALNTVRGYLGATGESYSIKKLIGALIVASFAGIAVAQTLSVGSLGITETVLIGLSVGFAVDFAVSKAKKTQ*