Scaffold Ga0115001_10328108

Overview

Basic Information

• Taxon OID: 3300009785
• Scaffold ID: Ga0115001_10328108
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 967
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F035272	Metagenome / Metatranscriptome	172	N
F051564	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115001_103281083	F035272	AGGAGG	MMTYKQWCNLRELLTTLNDEVDSRVCDDKVSEAFDDVWDMVDEIDTRQEQD*
Ga0115001_103281085	F051564	N/A	MLKEWCETYEEAIETLDYLANRSVGTAKEEIKEGLEDFFIDNGLMSEDEFRKEVDDE*
Ga0115001_103281086	F004856	AGGAGG	MMSKWLDGTKPKKIEARYSAYLSWDLDDYDIDWDDIEDYEVWRGVLEITFKDGTKRVIDSFQELSVDTKHGLEEVLVLDEDWNQV