Scaffold Ga0115001_10269669

Overview

Basic Information

• Taxon OID: 3300009785
• Scaffold ID: Ga0115001_10269669
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1085
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F026711	Metagenome	197	Y
F094403	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115001_102696693	F002928	AGG	MKKNILVKFDLQIGEYEHQDSFIFNDKKTEYGYCKEFWNLNKKDELKENVFWDNQMLNAISVYSETEITYEQAKTLNELGVA*
Ga0115001_102696694	F026711	AGGGGG	MPKYKISQYDAEMVADWYNGSNLVHSSIADNKQIKKLFEQSEKLRQKAHKIIVNDLTWKFEFKRGNQRQLKVKYNYEKGSND*
Ga0115001_102696695	F094403	AGG	MTNKLIEKIKAYLKDNNLDKLKDNYIDMATDDDFIEYYPLPQSYLSSLDD