NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115001_10241788

Scaffold Ga0115001_10241788


Overview

Basic Information
Taxon OID3300009785 Open in IMG/M
Scaffold IDGa0115001_10241788 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004988Metagenome / Metatranscriptome416Y
F015532Metagenome / Metatranscriptome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0115001_102417881F015532GAGGMEMTLQDDKIMRAKIPDRMMSTTFTLPIDDRKVVGIVNYTANSTGVVPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKD
Ga0115001_102417884F004988N/AMAEEKLVKTICPRCNGNGYIRVTPVVATVGDTSVDYDCPMCENQFDHIGMRMSTHNGYVMLPLDQTRLNIEGGRESKVKWSGETLPEVGKE*

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