Scaffold Ga0115001_10214561

Overview

Basic Information

• Taxon OID: 3300009785
• Scaffold ID: Ga0115001_10214561
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1241
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F059361	Metagenome	134	Y
F066153	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115001_102145614	F024653	AGGAG	MDRDIPIVPRHIVSYKIYAEWSDNPKMVQLDHEMDGHLENTFNDWLRDIEDEENAR*
Ga0115001_102145615	F066153	AGGAG	MMPKDNQNIFMDWLDTCPVVEYRSVDNVLEDSSVWIYTVDFAVVKENDNDR*
Ga0115001_102145616	F059361	AGGAG	MIDDAITTVGFALQSYINICEEDDKNSGEENKAEREELILAWSIIRSHLDMSDDMPKDKLQPPRGH*