Scaffold Ga0115001_10168817

Overview

Basic Information

• Taxon OID: 3300009785
• Scaffold ID: Ga0115001_10168817
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028310	Metagenome	192	Y
F094106	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115001_101688171	F028310	N/A	NMAEKSIDDIYRDIENETEEECFDREDIKLKDQTPYAIVGTSMSGNILLKVGDELGFDVVKSLTFPEALKLISDLTIAVINRYAK*
Ga0115001_101688174	F094106	GGAG	MIKLNRVIRVKFIYTDELLKKLLGDYHPESHYIEMKDKFAKKEIIKFNPFDKPAFEKELLTFSNTFTFFTYKNIVETLKDYKEFTILEYRITDNNDDAFNRKEYGRCWACDISGIVIDKSLERYLEKEKSKYEIEYTKPGSKYKVKKVHYWGNEI*