Scaffold Ga0115001_10085787

Overview

Basic Information

• Taxon OID: 3300009785
• Scaffold ID: Ga0115001_10085787
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2064
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038862	Metagenome	165	N
F059448	Metagenome	134	N
F066148	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115001_100857873	F038862	GGAG	MSDKAWHISYLSAIVGPCAATTDDGCMAWDDDESDFVMRLLDRDNDGKNLLVVIQPEMNELAMYTLTGYCVANDLPYMIKDWDALSAEGQKEAQKTRH*
Ga0115001_100857875	F066148	GGAGG	MSNHLSEVAEGIIQACPTQLNPDEMSTLIAYMVWSYSMQGDWDDMLPKIVRCINLDDGHARIVRVANRDANKFLDKVLGDISDAKRN*
Ga0115001_100857877	F059448	AGGAG	MMDTGFKTIIEVIAKGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHGQRVWGVTLCRT*