Scaffold Ga0115001_10019550

Overview

Basic Information

• Taxon OID: 3300009785
• Scaffold ID: Ga0115001_10019550
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4530
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018830	Metagenome / Metatranscriptome	233	Y
F027054	Metagenome / Metatranscriptome	196	N
F049006	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115001_1001955010	F049006	N/A	MTQPEFLDVCSRHGVGQWIVMDDLLLNGKQHPHDLTIEDLNEFMWNTY*
Ga0115001_1001955014	F018830	N/A	MKKITLNEFYKRSIAKNIKTMRGHDGPSQEWDVYFDNKKICNCWDDSYGGELQVTNYDGQNIEDIFNTIDKESTWDPDWNWHTNLNLILEEVKSKTRFAKDAKRGVIIGFNKGNYDINGFKTDILTSLSRWSDSKDDYEKIITDSNPKTDGFVINWEYLTACEINVPAEYRWSKAKYVKAIRS*
Ga0115001_100195506	F027054	N/A	MTKQKENPYKFWTVELNIGQKRNMGKLKHSKSSGYRYDFWNLKDVHDRVVKRFDAGSGNTVKAMFQFNSTYKDEPETSFYMQIQWLGDVETFKEESGLQGEYMAYADRKILEDKLLILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYTEEQMIFEDEYFYTFEPNKLSETTTHVTNTETVG*