NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123357_10973284

Scaffold Ga0123357_10973284


Overview

Basic Information
Taxon OID3300009784 Open in IMG/M
Scaffold IDGa0123357_10973284 Open in IMG/M
Source Dataset NameEmbiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006225Metagenome378Y
F089102Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0123357_109732841F006225N/AMATAAFNKKWSLFTSTLDLELRKKLVKCYIWSIALYGAETLTLRAVAQKHLESFEMWCWRRMEKISWTDHVRNGEVLLRVKEQRNILHEIRKLKANWIGHILCRNCLL*
Ga0123357_109732842F089102N/AIDKLTEIGGCYGMEMNVEKTKVMRISRQPFPAKIRIDQKQLENMES*

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