Scaffold Ga0123357_10424961

Overview

Basic Information

• Taxon OID: 3300009784
• Scaffold ID: Ga0123357_10424961
• Source Dataset Name: Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1181
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y
F019492	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123357_104249614	F019492	GGA	VLLIQGRGEMSVRAAVTGVKLHHIAMDTGNYCNVVSTGYRGNVGYTCSYCSTVTSQCYGYREL*
Ga0123357_104249615	F004007	GGA	MTVKWLVLGRGEMAIMPAVNAVLLHLNAMDTGNDSNVVSTG*
Ga0123357_104249617	F008821	N/A	VLWIQGLNLLFLIKGRGEMAVKPAVTAVLLNQSVLDTGTEGNVVSTG*