NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123357_10424961

Scaffold Ga0123357_10424961


Overview

Basic Information
Taxon OID3300009784 Open in IMG/M
Scaffold IDGa0123357_10424961 Open in IMG/M
Source Dataset NameEmbiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1181
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004007Metagenome457Y
F008821Metagenome327Y
F019492Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0123357_104249614F019492GGAVLLIQGRGEMSVRAAVTGVKLHHIAMDTGNYCNVVSTGYRGNVGYTCSYCSTVTSQCYGYREL*
Ga0123357_104249615F004007GGAMTVKWLVLGRGEMAIMPAVNAVLLHLNAMDTGNDSNVVSTG*
Ga0123357_104249617F008821N/AVLWIQGLNLLFLIKGRGEMAVKPAVTAVLLNQSVLDTGTEGNVVSTG*

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