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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009784 Open in IMG/M |
| Scaffold ID | Ga0123357_10064549 Open in IMG/M |
| Source Dataset Name | Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4892 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Kalotermitidae → Cryptotermitinae → Cryptotermes → Cryptotermes secundus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Petit - Saut dam, French Guiana | |||||||
| Coordinates | Lat. (o) | 5.0626 | Long. (o) | -53.0462 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004007 | Metagenome | 457 | Y |
| F008034 | Metagenome | 340 | Y |
| F008821 | Metagenome | 327 | Y |
| F019492 | Metagenome | 229 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0123357_100645491 | F004007 | GGA | MLLVQGRGELALMTAVTIVLLHQCAVDTGTDCNVVSTG* |
| Ga0123357_1006454911 | F004007 | GGA | MLLVQGRRQTALMTAVTAVLLHLCAVDTGTDCNVVSTR* |
| Ga0123357_1006454918 | F004007 | GGA | MLLVQSRGEMALMTAVTIVLLHQCDVDTGTDCNVVSTE* |
| Ga0123357_1006454919 | F008821 | GGA | MTVMLLVQGRGELALMTAVTIVLLHQCDVDTGTDCNVVSTE* |
| Ga0123357_1006454921 | F008034 | N/A | MGESVEHWRATIGQWSGGRPQKCVTMHHHIQQACNNIGYKRIRFLVLISLLIIGCVELNPGPNHVSYVIQSNRYLCVCKGFVGIIIQVRGKMKRQLIVYLQLC* |
| Ga0123357_100645497 | F019492 | GGA | MLLVQGRGEMALMTAVTAVLLHQCAVDTGTGCNDVSTGQRGNGGYDCSYGSTVTSQCN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |