Basic Information | |
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Taxon OID | 3300009784 Open in IMG/M |
Scaffold ID | Ga0123357_10047097 Open in IMG/M |
Source Dataset Name | Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5845 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (76.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Petit - Saut dam, French Guiana | |||||||
Coordinates | Lat. (o) | 5.0626 | Long. (o) | -53.0462 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004007 | Metagenome | 457 | Y |
F008821 | Metagenome | 327 | Y |
F019492 | Metagenome | 229 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0123357_1004709711 | F004007 | GGA | MSLVQGGGEMEFMPAVTAILLHHSAKDAGTDCNIVSTG* |
Ga0123357_1004709715 | F019492 | N/A | MLWILGLTAMLLVQGRGEMALMPAVTAVLLQQSAMDIGTECNVVSTGWRGNGVYDCSYCNSVTSQNYGYRN* |
Ga0123357_1004709721 | F019492 | GGA | MLIVQGRGEIAVLPSVTTVLLHHCAMDTGTDCSVVNRGMRRNGVSAFRYRSAVTSQCYGYRD* |
Ga0123357_100470977 | F004007 | GGA | MLLVQGRGQMALMTSVTAVLLHECAVDTGTDCNVVSTG* |
Ga0123357_100470979 | F008821 | N/A | VLWIQGLTVILLVQGRGEMALITAVTIVLLHQCAVDTGTDCNVVSTG* |
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