Scaffold Ga0105164_10001260

Overview

Basic Information

• Taxon OID: 3300009777
• Scaffold ID: Ga0105164_10001260
• Source Dataset Name: Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16337
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Netherlands
• Coordinates
  • Lat. (^o): 52.2278
  • Long. (^o): 5.919

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022510	Metagenome / Metatranscriptome	214	Y
F043144	Metagenome / Metatranscriptome	157	Y
F069903	Metagenome	123	Y
F085792	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105164_100012601	F085792	AGAAG	MLGETALETINEEKKKVGKTTLVILTMAFAHTVFYLGPTLYLPLGLDDLFLLGYALVLADSSLVVFLGI
Ga0105164_1000126016	F043144	AGGAGG	MNIVSKIKVASGKLSVAWTSFVLRYPRVYLVATALVGMVSLILFFAPEASAQLETQVTDALNPLARLLVGPIAKGLAVIGLFAFVGLPYAGRWMMAVSSLVAAVILGLLANIVTAIFQGSTASSFTLG*
Ga0105164_100012602	F069903	AGG	MPRKRITLSLDTDIPSDKAIFDFLAGLPRRTRSEIIKEILFDALEKRDESREPDSPTSTAASDPAGIDADEIIEKLF*
Ga0105164_100012605	F022510	GAG	MALPRSILKQLWEAGYGGKVIRVPVKNERLRLKVIADEILGEAEGLYESKATTFVLERRGRSGFYRCFGALRLCRRFHLSVEEARRVRRRAYSRWNHWMRECEVKILQFAEKFGEGGEGRRRYLDLRKRVREGQEVDGSIGELLEMARVSVRSVTWS*