Scaffold Ga0116154_10000233

Overview

Basic Information

• Taxon OID: 3300009776
• Scaffold ID: Ga0116154_10000233
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC030_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80615
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 40.3
  • Long. (^o): -88.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004124	Metagenome / Metatranscriptome	452	Y
F015489	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116154_1000023336	F004124	GAGG	VWQDGGVKRPSSINGTVRRHRTPKEIAGIFRDHRRSGLSLLAFARKEGLCYASLLRWRSRQCQEANVLVPPAPQADPRFVPVKIEGEGLGGDYVLSWPAGRSLKIPLQFETDSLRRLLSVLEAVR*
Ga0116154_1000023343	F015489	N/A	MRPVCPWGCPGTVHRHGYYERYADPEETQKERIQRYLCRPCGLSFSVLPPHRLPYRSIRAERLQADFDKRAEIQTQGLDPPPRVVEAGCLQRAWSALTKRVTPLKDAFGQLVSSTVSDGASLWASLRQSFDSVAKMLCFLSEHHRISLLGNHRCLQPPG*