NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123339_10072576

Scaffold Ga0123339_10072576


Overview

Basic Information
Taxon OID3300009774 Open in IMG/M
Scaffold IDGa0123339_10072576 Open in IMG/M
Source Dataset NameGlacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1827
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameBorup Fiord, Nunavut, Canada
CoordinatesLat. (o)81.017Long. (o)-81.583Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003850Metagenome / Metatranscriptome465Y

Sequences

Protein IDFamilyRBSSequence
Ga0123339_100725762F003850GGTGGMTMPPTHFLGDLGPQAQMMSKNCNNERMAMVLQYVALGSMIVMAGAAASHVLRDAFWPSRHDRDRAR*

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