Scaffold Ga0123333_10147232

Overview

Basic Information

• Taxon OID: 3300009773
• Scaffold ID: Ga0123333_10147232
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C12 SIP DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1080
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123333_101472321	F036251	GGAGG	MSAKERQTVLFSDTGVTTPIDTTDRVSLTDGAVFVAQRIEIRPSNKYGEYVVFDGEDLDGKAFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFFTLV*
Ga0123333_101472322	F040648	N/A	DTAREGVTALETATTLIHIPTREMAKIQTAIKKMREAAVYVENRARNLPVRSNATTKSALKEALKGASQEQIERAYTILSGQDAAYEVPAGGEEE*