Scaffold Ga0116134_1002485

Overview

Basic Information

• Taxon OID: 3300009764
• Scaffold ID: Ga0116134_1002485
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9006
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F029198	Metagenome	189	Y
F080601	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116134_100248512	F006278	GAGG	MFRGEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSVGEQLLKWLASVGALFVAGSVYAVLPPMQRIAERRKRRQGNNKERSSIRHSHPLEAI*
Ga0116134_100248514	F010114	GAGG	MIIELNDDETRLLYNVLIEQAQEHFSYASTSEVAERLCKLATRF
Ga0116134_10024855	F080601	GGAGG	MRTPLTKGGNPGTVRTSTRPNSHERLSSSVTALVIEQVLAELGVHARLSDIVRGAQLFETAIMQSRAPNRSICAE*
Ga0116134_10024859	F029198	GAGG	MDSKPTSRAVRVEGEVIVLHCWACGTAHCVNLELCIPGELTHMVCSNSKCRMSMFLVNELVVDDKTRKQMTRLELNERTTYSRFWK*