Scaffold Ga0123370_1093993

Overview

Basic Information

• Taxon OID: 3300009748
• Scaffold ID: Ga0123370_1093993
• Source Dataset Name: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_210_18m (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1956
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Louisana Shelf, Hypoxic Zone, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.8679
  • Long. (^o): -90.4764

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032237	Metagenome / Metatranscriptome	180	Y
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0123370_10939931	F053965	N/A	INSPAEREAKEAILKITESQWWKDEVGTEFKMPKKYDNKKQQAIFTEPQFVFIDNFIFGRHEFCENCRLYKGLLTYTNGQMVYAKPHVT*
Ga0123370_10939932	F077161	GGA	MRNLTLPEIQARFDRHAKLHRFEVDKLFEKVKHKPFNEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYCGILRDIVTEEIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTNQQDLIPDYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVRMTYEGLKRAELFNNIGRAKA*
Ga0123370_10939935	F032237	N/A	MSEENRFIDKTTSLKTVERVKFSLKNFSKGSKIEISWAFNPEDSMHIDQFLETDPEKNNILTALQGFKKLCEDNLGVKILEDE*