NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116191_1015619

Scaffold Ga0116191_1015619


Overview

Basic Information
Taxon OID3300009716 Open in IMG/M
Scaffold IDGa0116191_1015619 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4543
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032658Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0116191_10156192F032658N/AMRNIKQFDKFDLIKEEASPRLPKSEDYWIKKGKDGKKVALYTHDDLDGIMSALCMKKYLLNAGFTIEKYGILNYSEGWKYTTLDPSLINIVLDFANMPGDERDEMVDYYLDHHGLFTADELEKYKSSPVQKKKTGSAYEAICQALGVAQDEMTVSVIDMVDSAKYQDYGVSWQRLLDFNLSEIKKSDKRRLEFAAAFNQFIKRSDTKTVISVIDNCEDASIYSIYNTMKRVHPEHNVVMGGPRKGQKKEFLSDSAWRLGEMQKRTRGTNSYKNKYTSQAEFVAKFGVNGLIKLDGYQIIGNLAFVPTGTWANALRARTIIEKDFMEGRIKEEPKFILLQYGGTLQVCSYKKMEEMDELPKLRNGEVVNDLGKYMTELLTNFQKHLGYHNPDTSLGQDEITVSGGHGGIGSISNVFGECEVEPYVGCRYVDMFKNKIITDLSGVAFNLRLKWSEPAEEFAPREPEMNNKVIQAKDVTKLDKQGNVIKNFENFNKKTN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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